Identification of distinct SET/TAF-Ibeta domains required for core histone binding and quantitative characterisation of the interaction (Journal article)

Karetsou, Z./ Emmanouilidou, A./ Sanidas, I./ Liokatis, S./ Nikolakaki, E./ Politou, A. S./ Papamarcaki, T.


BACKGROUND: The assembly of nucleosomes to higher-order chromatin structures is finely tuned by the relative affinities of histones for chaperones and nucleosomal binding sites. The myeloid leukaemia protein SET/TAF-Ibeta belongs to the NAP1 family of histone chaperones and participates in several chromatin-based mechanisms, such as chromatin assembly, nucleosome reorganisation and transcriptional activation. To better understand the histone chaperone function of SET/TAF-Ibeta, we designed several SET/TAF-Ibeta truncations, examined their structural integrity by circular Dichroism and assessed qualitatively and quantitatively the histone binding properties of wild-type protein and mutant forms using GST-pull down experiments and fluorescence spectroscopy-based binding assays. RESULTS: Wild type SET/TAF-Ibeta binds to histones H2B and H3 with Kd values of 2.87 and 0.15 microM, respectively. The preferential binding of SET/TAF-Ibeta to histone H3 is mediated by its central region and the globular part of H3. On the contrary, the acidic C-terminal tail and the amino-terminal dimerisation domain of SET/TAF-Ibeta, as well as the H3 amino-terminal tail, are dispensable for this interaction. CONCLUSION: This type of analysis allowed us to assess the relative affinities of SET/TAF-Ibeta for different histones and identify the domains of the protein required for effective histone recognition. Our findings are consistent with recent structural studies of SET/TAF-Ibeta and can be valuable to understand the role of SET/TAF-Ibeta in chromatin function.
Institution and School/Department of submitter: Πανεπιστήμιο Ιωαννίνων. Σχολή Επιστημών Υγείας. Τμήμα Ιατρικής
Keywords: Amino Acid Sequence,Chromatin/metabolism,Chromosomal Proteins, Non-Histone/chemistry/*metabolism,Circular Dichroism,Histone Chaperones,Histones/*metabolism,Molecular Chaperones/metabolism,Molecular Sequence Data,Mutant Proteins/metabolism,Protein Binding,Protein Structure, Tertiary,Recombinant Proteins/metabolism,Spectrometry, Fluorescence,Transcription Factors/chemistry/*metabolism
URI: http://olympias.lib.uoi.gr/jspui/handle/123456789/21058
ISSN: 1471-2091
Link: http://www.ncbi.nlm.nih.gov/pubmed/19358706
http://www.biomedcentral.com/1471-2091/10/10
Appears in Collections:Άρθρα σε επιστημονικά περιοδικά ( Ανοικτά)

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